aMeta Workhsop
7/4/24
snakemakeA simple methodology
Actually it is much more complicated…
And in ancient metagenomics, it is much more complicated…
It is even more complicated in a real situation:
The aMeta Workflow
It would be very hard to authenticate one by one
snakemakeProject name
├── LICENSE
├── README.md <- The top-level README for developers using this project.
├── data
│ ├── external <- Data from third party sources.
│ ├── interim <- Intermediate data that has been transformed.
│ ├── processed <- The final, canonical data sets for modeling.
│ └── raw <- The original read only
│
├── docs <- All the document information should go here
│ ├── reports
│ └── presentations
│
├── workflow <- Source code and snakemake rules
│ ├── Snakefile <- A snakefile, should include all sub rules
│ │
│ ├── rules <- Seperate snakefile rules
│ │
│ ├── environments <- Conda environments
│ │
│ └── singularity <- Singularity containers
│
└── results
README.md fileaMeta Workshop